2022

2021

1. Jan L Klee ,Bryan C Souza,Francesco P Battaglia. e-Life. Learning differentially shapes prefrontal and hippocampal activity during classical conditioning

2. Matteo Guardamagna, Ronny Eichler, Rafael Pedrosa, Arno A. A. Aarts, Arne F. Meyer, Francesco P. Battaglia. bioRrxiv. The Hybrid Drive: a chronic implant device combining tetrode arrays with silicon probes for layer-resolved ensemble electrophysiology in freely moving mice.

3. Matteo Guardamagna, Federico Stella, Francesco P. Battaglia. Distinct hippocampal network states support theta phase precession and theta sequences in CA1. (BioRxiv prerprint)

2020

1. Klee JL, Kiliaan AJ, Lipponen A, Battaglia FP . Reduced firing rates of pyramidal cells in the frontal cortex of APP/PS1 can be restored by acute treatment with levetiracetam. (2020) Neurobiology of Aging 96, 79-86

Previous Publications

2017-2020

• Genzel L, Schut E, Schroeder T, Eichler R, Gomez A, Navarro Lobato I, Battaglia FP The Object Space Task for mice and rats. (2019) PLoS Biology 17(6):e3000322. doi: 10.1371/journal.pbio.3000322

• Grossberger L Battaglia FP, Vinck MA Unsupervised clustering of temporal patterns in high-dimensional neuronal ensembles using a novel dissimilarity measure. (2018) PLoS Comput Biol. 2018 Jul 6;14(7):e1006283. doi: 10.1371/journal.pcbi.1006283. (FPB, MAV, shared senior authors)

• Arbab T, Pennartz CMA, Battaglia FP Impaired hippocampal representation of place in the Fmr1-knockout mouse model of fragile X syndrome (2018) Scientific reports 8 (1), 8889

• Arbab T, Battaglia FP, Pennartz CMA, Bosman CA Abnormal hippocampal theta and gamma hypersynchrony produces network and spike timing disturbances in the Fmr1-KO mouse model of Fragile X syndrome (2018) Neurobiology of disease 114, 65-73

• Tavoni G, Ferrari U,  Battaglia FP,  Cocco S, and  Monasson R Functional Coupling Networks Inferred from Prefrontal Cortex Activity Show Experience-Related Effective Plasticity(2017) Network Neuroscience online doi:10.1162/NETN_a_00014

• Genzel L, Rossato JI, Jacobse J, Grieves RM, Spooner PA, Battaglia FP, Fernández G, Morris RG.

• The Yin and Yang of Memory Consolidation: Hippocampal and Neocortical. (2017) PLoS Biology 15: e2000531- 2016

1995 - 2016

• Bartic C, Battaglia FP, Wang L, Nguyen TT, Cabral H, Navratilova Z. A Multichannel Recording System with Optical Stimulation for Closed-Loop Optogenetic Experiments. (2016) Methods Mol Biol. 1408: 333-44

• Malkki HAI, Mertens PE, Lankelma JV, Vinck M, van Schalkwijk FJ, van Mourik-Donga LB, Battaglia FP, Mahlke C, Kuhl D, Pennartz CM Effects of Arc/Arg3. (2016) 1 gene deletion on rhythmic synchronization of hippocampal CA1 neurons during locomotor activity and sleep Neurobiology of Learning and Memory 131: 155-165

• Gysbrechts B, Wang L, Nguyen Do Trong N, Cabral H, Navratilova Z, Battaglia FP, Saeys W and Bartic C (2015) Light distribution and thermal effects in the rat brain under optogenetic stimulation Journal of Biophotonics DOI: 10.1002/jbio.201500106

• Battaglia FP, Schnitzer MJ Editorial overview: Large-scale recording technology: Scaling up neuroscience Current Opinion in Neurobiology doi:10.1016/j.conb.2015.03.002

• Navratilova Z, Battaglia FP* (2015) CA2: It’s about time–and episodes (article preview) Neuron 58: 8-10.

• Vinck M, Huurdeman L, Bosman CA, Fries P, Battaglia FP, Pennartz CM, Tiesinga P (2014) How to detect the Granger-causal flow direction in the presence of additive noise? Neuroimage doi: 10.1016/j.neuroimage.2014.12.017.

• Cabral HO, Fouquet C, Rondi-Reig L, Pennartz CMA, Battaglia FP* (2014) Single-trial properties of Place Cells in Control and CA1 NMDA receptor subunit 1-KO mice Journal of Neuroscience 34(48):15861-9

• Nguyen TK, Navratilova Z, Cabral H, Wang L, Gielen G, Battaglia FP, Bartic C (2014) Closed-loop optical neural stimulation based on a 32-channel low-noise recording system with online spike sorting. J Neural Eng 11:046005.

• Hermans EJ, Battaglia FP, Atsak P, de Voogd LD, Fernández G, Roozendaal B (2014) How the amygdala affects emotional memory by altering brain network properties. Neurobiol Learn Mem 112: 2-16

• Cabral H.O., Vinck M., Fouquet C., Pennartz C.M.A., Rondi-Reig L., Battaglia F.P. (2014) Oscillatory Dynamics and Place Field Maps Reflect Hippocampal Ensemble Processing of Sequence and Place Memory under NMDA Receptor Control Neuron 81(2):402–415

• Genzel L, Kroes MC, Dresler M, Battaglia FP. (2014) Light sleep versus slow wave sleep in memory consolidation: a question of global versus local processes?, Trends in Neurosciences 37(1):10-9.

• Vinck M, Battaglia FP, Balakirsky VB, Han Vinck AJ, Pennartz CM Estimation of the entropy based on its polynomial representation, (2012) Phys. Rev. E 85(5 Pt 1):051139.

• Battaglia FP Borensztajn G, Bod R (2012) Compositionality in neural systems: from rats to language. invited review for Neuroscience and Biobehavioral Reviews, DOI 10.1016/j.neubiorev.2012.04.004

• Vinck M, Battaglia FP, Womelsdorf T, Pennartz CM (2012) Improved measures of phase-coupling between spikes and the Local Field Potential J. Comp Neurosci published online DOI 10.1007/s10827-011-0374-4

• Battaglia FP, McNaughton BL (2011) Polyrhythms of the brain, (Article preview) Neuron, 72, 6-8

• Peyrache A, Battaglia FP, Destexhe A (2011) Inhibition recruitment in prefrontal cortex during sleep spindles and gating of hippocampal inputs, PNAS, 108, 17207-12

• Pennartz CM, Battaglia FP, Ito R, Robbins TW, Verschure P (2011) The hippocampal-striatal axis in learning and goal-directed behavior, Trends in Neurosciences, 34, 548-59.

• Battaglia FP, Pennartz CM (2011) The construction of semantic memory: grammar based representations learned from relational episodic information, Frontiers in Computational Neuroscience 5:36

• Battaglia FP, Benchenane K, Sirota A, Pennartz CM, Wiener SI (2011) The hippocampus: hub of brain network communication for memory. Trends in Cognitive Sciences, 15, 310-18.

• Malkki HA, Donga AB, de Groot SE, NeuroBSIK Mouse Phenomics Consortium, Battaglia FP, Pennartz CM, (2011) Towards mouse models of perseveration: A heritable component in extinction of operant behavior in fourteen standard and recombinant inbred mouse lines, Neurobiology of Learning and Memory doi:10.1016/j.nlm.2011.05.005

• Benchenane K, Tiesinga PH, Battaglia FP* (2011) Oscillations in the prefrontal cortex: a gateway to memory and attention Current Opinion in Neurobiology 21, 475-85.

• Vinck M, Oostenveld R, van Wingerden M, Battaglia F , Pennartz CM (2011) An improved index of phase-synchronization for electrophysiological data in the presence of volume-conduction, noise and sample-size bias, NeuroImage 55, 1548-65.

• Malkki, HA, Donga, LA, DeGroot SE, Battaglia FP Pennartz CM (2010) Appetitive operant conditioning in mice: heritability and dissociability of training stages, Frontiers in Behavioral Neuroscience doi: 10.3389/fnbeh.2010.00171

• Benchenane K, Peyrache A, Khamassi M, Tierney PL, Gioanni Y, Battaglia FP*, Wiener SI (2010) Coherent theta oscillations and reorganization of spike timing in the hippocampal- prefrontal network upon learning. Neuron 66:921-936. (joint senior co-authorship: FPB and Dr. S.I. Wiener).

• Peyrache A, Benchenane K, Khamassi M, Wiener SI and Battaglia FP* (2010) Sequential reinstatement of neocortical activity during slow oscillations depends on cells’ global activity. Front. Syst. Neurosci. 3:18. doi:10.3389/neuro.06.018.2009

• Peyrache A, Benchenane K, Khamassi M, Wiener SI, Battaglia FP* (2010) Principal component analysis of ensemble recordings reveals cell assemblies at high temporal resolution. J Comput Neurosci. 29 1-2 309-25 (featured in Nature Reviews Neuroscience 10, 546-547 (August 2009) | doi:10.1038/nrn2695)

• Battaglia FP, Kalenscher T, Cabral H, Winkel J, Bos J, Manuputy R, van Lieshout T, Pinkse F, Beukers H, Pennartz C (2009) The Lantern: an ultra-light micro-drive for multi-tetrode recordings in mice and other small animals. J Neurosci Methods 178:291-300.

• Benchenane K, Khamassi M, Peyrache A, Battaglia FP, Wiener, SI Theta Band LFP Coherence Between Hippocampus And Prefrontal Cortex and Reorganization of Ensemble Cell Activity During Learning (2008) Neuropsychobiology 58 233

• Hoffman K.L., Battaglia F.P., Harris K., MacLean J.N., Marshall L., Mehta M.R. (2007. The upshot of up states in the neocortex: from slow oscillations to memory formation. J. Neuroscience 27 11838-41

• K.M. Gothard, F.P. Battaglia, C.A. Erickson, K.M. Spitler, and D.G. Amaral (2007) Conjunctive Encoding of Facial Expression and Identity in the Monkey Amygdala J. Neurophysiology 97 1671-83.

• B.L. McNaughton, F.P. Battaglia, O. Jensen, E.I. Moser and M.B. Moser (2006) Path-integration and the neural basis of the ‘cognitive map’ Nature Reviews Neuroscience 7 663-678

• F.P Battaglia, G.R Sutherland, S.L. Cowen, B.L. McNaughton, and K.D. Harris (2005) Firing rate modulation: a simple statistical view of memory trace reactivation Neural Networks 18 1280-1291

• F.P. Battaglia, G.R. Sutherland and B.L. McNaughton (2004) Hippocampal sharp wave bursts coincide with neocortical "up-state" transitions. Learning and Memory 11 697-704.

• F.P. Battaglia , G.R. Sutherland and B.L. McNaughton (2004) Local sensory cues and place cell directionality: additional evidence of prospective coding in the hippocampus. Journal of Neuroscience 24 4541-4550.

• S. Panzeri, E.T. Rolls, F.P. Battaglia, and R. Lavis (2001) Simulation studies of the speed of recurrent processing Lecture notes in artificial intelligence 2036 320-332

• S. Panzeri, E.T. Rolls, F.P. Battaglia and R. Lavis (2001) Speed of feedforward and recurrent processing in multilayer networks of integrate-and-fire neurons. Network 12 423-440

• K.M. Gothard, K.L. Hoffman, F.P. Battaglia and B.L. McNaughton (2001) Dentate Gyrus and CA1 ensemble activity during spatial reference frame shifts in the presence and absence of visual input. Journal of Neuroscience 21 7284-7292

• A.D. Redish, F.P. Battaglia, M.K. Chawla, A.D. Ekstrom, J.L. Gerrard, P. Lipa, E.S. Rosenzweig, P.F. Worley, J.F. Guzowski, B.L. McNaughton, and C.A. Barnes (2001) Independence of Firing Correlates of Anatomically Proximate Hippocampal Pyramidal Cells. Journal of Neuroscience 21 RC134

• F.P. Battaglia and A. Treves (1998) Attractor neural networks storing multiple space representations: a model for hippocampal place fields. Physical Review E 58 7738-7753

• F.P. Battaglia and A.Treves (1998) Stable and rapid recurrent processing in realistic autossociative memories. Neural Computation 10 431-450.

• F.P.Battaglia and S.Fusi (1995) Learning in neural networks with partially structured synapses. Network 6 261-270.